Occurrence

Ogasawara DNA barcode database

Latest version published by National Institute of Genetics, ROIS on 16 May 2022 National Institute of Genetics, ROIS
This dataset contains 50 specimen records of 1 suborder, 4 family, 2 subfamily, 6 genus and 4 species of insects and freshwater animals in Ogasawara Islands, Japan between 2003 and 2017 published by National Institute for Environmental Studies, Japan (NIES). The Ogasawara DNA barcode database can be found at https://www.nies.go.jp/ogasawara/.
Publication date:
16 May 2022
License:
CC-BY 4.0

Data Records

The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 50 records.

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Downloads

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 50 records in English (5 kB) - Update frequency: not planned
Metadata as an EML file download in English (14 kB)
Metadata as an RTF file download in English (10 kB)

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

National Institute for Environmental Studies (2021) Ogasawara DNA barcode database. 50 records, Contributed by Kondo N, Ueno R, Satake K, Yoshida K, Totsu K Online:https://www.gbif.jp/ipt/archive.do?r=nies_odbd, under CC BY 4.0, released on 01/03/2021.

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is National Institute of Genetics, ROIS. This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: 32de56e2-db99-4f9a-bc23-54d629013809.  National Institute of Genetics, ROIS publishes this resource, and is itself registered in GBIF as a data publisher endorsed by GBIF Japan.

Keywords

Occurrence; Occurrence

Contacts

Who created the resource:

Natsuko I. Kondo
Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
305-8506 Tsukuba
Ibaraki
JP
+8129-850-2860

Who can answer questions about the resource:

Natsuko I. Kondo
Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
305-8506 Tsukuba
Ibaraki
JP
+8129-850-2860
Biodiversity Division
National Institute for Environmental Studies

Who filled in the metadata:

Natsuko I. Kondo
Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
305-8506 Tsukuba
Ibaraki
JP
+8129-850-2860

Who else was associated with the resource:

Content Provider
Natsuko I. Kondo
Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
305-8506 Tsukuba
Ibaraki
JP
+8129-850-2860
Content Provider
Ryuhei Ueno
Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
305-8506 Tsukuba
Ibaraki
JP
+8129-850-2408
Content Provider
Kiyoshi Satake
Senior Research Associate
National Institute for Environmental Studies
16-2 Onogawa
305-8506 Tsukuba
Ibaraki
JP
+8129-850-2446
Content Provider
Katsuhiko Yoshida
Senior Researcher
National Institute for Environmental Studies
16-2 Onogawa
305-8506 Tsukuba
Ibaraki
JP
+8129-850-2443
Programmer
Kumiko Totsu
Specialist (Database engineer)
National Institute for Environmental Studies
16-2 Onogawa
305-8506 Tsukuba
Ibaraki
JP
+8129-850-2894

Geographic Coverage

Ogasawara Islands

Bounding Coordinates South West [26.608, 142.122], North East [27.106, 142.238]

Taxonomic Coverage

No Description available

Suborder  Brachycera
Family  Tipulidae,  Talitridae,  Sphaeromatidae,  Sphaeriidae
Subfamily  Orthocladiinae,  Chironominae
Genus  Gyraulus,  Ablabesmyia,  Thienemanniella,  Cricotopus,  Simulium,  Limnophora,  Physella,  Macropelopia,  Chironomus,  Stenomelania

Temporal Coverage

Start Date / End Date 2016-02-14 / 2017-01-20

Project Data

No Description available

Title DNA barcoding of freshwater invertebrates in Ogasawara Islands.

The personnel involved in the project:

Natsuko I. Kondo

Sampling Methods

Freshwater invertebrates were sampled from rivers and dams in Ogasawara Islands from 2003 to 2017. Samples were collected on D-frame nets with a mesh size of 0.475 mm. We also picked up samples from the underneath the stones on the bottom of rivers. Samples were preserved in 99.5% ethanol until DNA extraction.

Study Extent Freshwater invertebrates were sampled in Ogasawara Islands from 2003 to 2017.

Method step description:

  1. Specimens were removed from ethanol and identified by morphology.
  2. After morphological identification, samples were subjected to DNA extraction. Based on the partial sequence of COI, we checked for discrepancies in morphological identification and DNA sequence data.

Additional Metadata

Alternative Identifiers 32de56e2-db99-4f9a-bc23-54d629013809
https://www.gbif.jp/ipt/resource?r=nies_odbd